2.500 Å
X-ray
2015-03-25
Name: | cGMP-dependent protein kinase 1 |
---|---|
ID: | KGP1_HUMAN |
AC: | Q13976 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.12 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 18 % |
C | 82 % |
B-Factor: | 29.815 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.981 | 783.000 |
% Hydrophobic | % Polar |
---|---|
51.29 | 48.71 |
According to VolSite |
HET Code: | PCG |
---|---|
Formula: | C10H11N5O7P |
Molecular weight: | 344.197 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 72.44 % |
Polar Surface area: | 183.16 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 3 |
Rings: | 4 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
37.0476 | -40.6217 | -48.5816 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CG2 | ILE- 146 | 4.34 | 0 | Hydrophobic |
C8 | CG2 | VAL- 165 | 3.66 | 0 | Hydrophobic |
C8 | SG | CYS- 173 | 4.16 | 0 | Hydrophobic |
C8 | SD | MET- 175 | 3.83 | 0 | Hydrophobic |
C1' | CB | PHE- 181 | 3.79 | 0 | Hydrophobic |
O3' | N | GLY- 182 | 3.38 | 124.6 | H-Bond (Protein Donor) |
O2' | N | GLY- 182 | 2.73 | 146.64 | H-Bond (Protein Donor) |
O3' | N | LEU- 184 | 3.48 | 151.74 | H-Bond (Protein Donor) |
C3' | CD1 | LEU- 184 | 3.87 | 0 | Hydrophobic |
O1A | N | ALA- 185 | 2.81 | 161.32 | H-Bond (Protein Donor) |
O1A | NH1 | ARG- 192 | 3.11 | 163.63 | H-Bond (Protein Donor) |
O2A | N | THR- 193 | 2.84 | 164.85 | H-Bond (Protein Donor) |
O2A | OG1 | THR- 193 | 2.65 | 168.06 | H-Bond (Protein Donor) |
N2 | OG1 | THR- 193 | 2.63 | 173.72 | H-Bond (Ligand Donor) |
C5' | CB | ALA- 194 | 4.03 | 0 | Hydrophobic |
C4' | CG2 | VAL- 196 | 4.17 | 0 | Hydrophobic |
N1 | OE2 | GLU- 229 | 2.64 | 148.28 | H-Bond (Ligand Donor) |
N2 | OE2 | GLU- 229 | 2.95 | 131.62 | H-Bond (Ligand Donor) |