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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4jtcNAPVoltage-gated potassium channel subunit beta-2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4jtcNAPVoltage-gated potassium channel subunit beta-2/1.000
4jtdNAPVoltage-gated potassium channel subunit beta-2/0.798
3lnmNAPVoltage-gated potassium channel subunit beta-2/0.621
4aubNAPL-glyceraldehyde 3-phosphate reductase1.1.10.548
4jtaNAPVoltage-gated potassium channel subunit beta-2/0.546
2r9rNAPVoltage-gated potassium channel subunit beta-2/0.544
1lqaNDPProtein tas/0.509
2clpNDPAflatoxin B1 aldehyde reductase member 3/0.504
2c91NAPAflatoxin B1 aldehyde reductase member 2/0.478
3q67NAPAldose reductase1.1.1.210.456
3v36NAPAldose reductase1.1.1.210.456
3q65NAPAldose reductase1.1.1.210.447
2iq0NAPAldose reductase1.1.1.210.445
1ah4NAPAldose reductase1.1.1.210.444