sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4io8 | 3FD | Heat shock 70 kDa protein 1B |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4io8 | 3FD | Heat shock 70 kDa protein 1B | / | 1.000 | |
| 3m3z | 3F5 | Heat shock cognate 71 kDa protein | / | 0.550 | |
| 3fzf | ATP | Heat shock cognate 71 kDa protein | / | 0.541 | |
| 3fzm | 3GO | Heat shock cognate 71 kDa protein | / | 0.537 | |
| 1ngj | ANP | Heat shock cognate 71 kDa protein | / | 0.491 | |
| 1ngi | ANP | Heat shock cognate 71 kDa protein | / | 0.488 | |
| 5aqz | SGV | Heat shock 70 kDa protein 1A | / | 0.486 | |
| 3d2e | ATP | Heat shock protein homolog SSE1 | / | 0.485 | |
| 1ngc | ADP | Heat shock cognate 71 kDa protein | / | 0.481 | |
| 1ngh | ATP | Heat shock cognate 71 kDa protein | / | 0.469 | |
| 4b9q | ATP | Chaperone protein DnaK | / | 0.464 | |
| 1nge | ATP | Heat shock cognate 71 kDa protein | / | 0.456 | |
| 3hsc | ADP | Heat shock cognate 71 kDa protein | / | 0.448 | |
| 3reo | SAH | (Iso)eugenol O-methyltransferase | 2.1.1.146 | 0.445 | |
| 2qwq | ADP | Heat shock cognate 71 kDa protein | / | 0.444 |