2.580 Å
X-ray
2013-01-07
Name: | Heat shock 70 kDa protein 1B |
---|---|
ID: | HS71B_HUMAN |
AC: | P0DMV9 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 30.398 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.057 | 475.875 |
% Hydrophobic | % Polar |
---|---|
36.88 | 63.12 |
According to VolSite |
HET Code: | 3FD |
---|---|
Formula: | C25H23Cl2N7O4 |
Molecular weight: | 556.401 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.64 % |
Polar Surface area: | 164.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 4 |
Rings: | 5 |
Aromatic rings: | 4 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
1.18174 | 4.80882 | 13.9069 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C28 | CE2 | TYR- 15 | 3.85 | 0 | Hydrophobic |
C30 | CD2 | TYR- 15 | 3.72 | 0 | Hydrophobic |
C33 | CB | THR- 37 | 3.88 | 0 | Hydrophobic |
C32 | CG2 | THR- 37 | 3.77 | 0 | Hydrophobic |
O26 | OE1 | GLU- 268 | 3.08 | 166.37 | H-Bond (Ligand Donor) |
O26 | NZ | LYS- 271 | 2.72 | 148.87 | H-Bond (Protein Donor) |
N10 | O | ARG- 272 | 3.46 | 121.77 | H-Bond (Ligand Donor) |
C15 | CD | ARG- 272 | 3.94 | 0 | Hydrophobic |
N1 | OG | SER- 275 | 2.69 | 165.66 | H-Bond (Protein Donor) |
O27 | O | HOH- 524 | 2.84 | 175.04 | H-Bond (Ligand Donor) |
N3 | O | HOH- 525 | 2.92 | 179.97 | H-Bond (Protein Donor) |