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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4id5T27Gag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4id5T27Gag-Pol polyprotein2.7.7.491.000
4i2pG73Gag-Pol polyprotein2.7.7.490.800
4g1qT27Gag-Pol polyprotein2.7.7.490.785
2zd1T27Gag-Pol polyprotein2.7.7.490.772
4ifvT27Gag-Pol polyprotein2.7.7.490.765
3qlhT27Gag-Pol polyprotein2.7.7.490.693
2ze2T27Gag-Pol polyprotein2.7.7.490.616
4ig3T27Gag-Pol polyprotein2.7.7.490.605
4kfbT27Gag-Pol polyprotein2.7.7.490.567
4i2q1BTGag-Pol polyprotein2.7.7.490.562
3is9AC7Gag-Pol polyprotein2.7.7.490.557
3ffi3OBGag-Pol polyprotein2.7.7.490.545
1c1bGCAGag-Pol polyprotein2.7.7.490.539
1tl3H20Gag-Pol polyprotein2.7.7.490.535
3bgrT27Gag-Pol polyprotein2.7.7.490.521
1rt4UC1Gag-Pol polyprotein2.7.7.490.518
1tl1H18Gag-Pol polyprotein2.7.7.490.517
3irxUDRGag-Pol polyprotein2.7.7.490.517
4rw6494Gag-Pol polyprotein2.7.7.490.500
1s9eADBGag-Pol polyprotein2.7.7.490.485
2hnzPC0Gag-Pol polyprotein2.7.7.490.484
3lanKBTGag-Pol polyprotein2.7.7.490.484
1s6qTPBGag-Pol polyprotein2.7.7.490.482
1tktH12Gag-Pol polyprotein2.7.7.490.480
3mec65BGag-Pol polyprotein2.7.7.490.480
1tkzH16Gag-Pol polyprotein2.7.7.490.476
4kko1REGag-Pol polyprotein2.7.7.490.476
2rf2MRXGag-Pol polyprotein2.7.7.490.475
1hpzAAPGag-Pol polyprotein2.7.7.490.474
3m8p65BGag-Pol polyprotein2.7.7.490.472
1vruAAPGag-Pol polyprotein2.7.7.490.471
2ban357Gag-Pol polyprotein2.7.7.490.470
1eetBFUGag-Pol polyprotein2.7.7.490.469
1revTB9Gag-Pol polyprotein2.7.7.490.469
3meeT27Gag-Pol polyprotein2.7.7.490.469
1s1wUC1Gag-Pol polyprotein2.7.7.490.468
4ko0JLJGag-Pol polyprotein2.7.7.490.468
3megT27Gag-Pol polyprotein2.7.7.490.467
4mfb29TGag-Pol polyprotein2.7.7.490.466
3dmjGWEPol protein/0.464
3i0rRT3Gag-Pol polyprotein2.7.7.490.464
3lalKRVGag-Pol polyprotein2.7.7.490.462
3med65BGag-Pol polyprotein2.7.7.490.462
2vg7NNIGag-Pol polyprotein2.7.7.490.458
2vg5NNCGag-Pol polyprotein2.7.7.490.456
1hnvTBOGag-Pol polyprotein2.7.7.490.455
1tvrTB9Gag-Pol polyprotein2.7.7.490.454
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.450
1rt5UC2Gag-Pol polyprotein2.7.7.490.449
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.449
4ge40KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.448
2wonZZEGag-Pol polyprotein2.7.7.490.446
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.445
1s1tUC1Gag-Pol polyprotein2.7.7.490.443
1hniAAAGag-Pol polyprotein2.7.7.490.442
1ikyMSDGag-Pol polyprotein2.7.7.490.442
2xytTC9Soluble acetylcholine receptor/0.441
1ikwEFZGag-Pol polyprotein2.7.7.490.440