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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4i2pG73Gag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4i2pG73Gag-Pol polyprotein2.7.7.491.000
4g1qT27Gag-Pol polyprotein2.7.7.490.769
4id5T27Gag-Pol polyprotein2.7.7.490.742
2zd1T27Gag-Pol polyprotein2.7.7.490.703
4ifvT27Gag-Pol polyprotein2.7.7.490.662
2ze2T27Gag-Pol polyprotein2.7.7.490.628
3qlhT27Gag-Pol polyprotein2.7.7.490.624
4kfbT27Gag-Pol polyprotein2.7.7.490.551
4i2q1BTGag-Pol polyprotein2.7.7.490.550
4ig3T27Gag-Pol polyprotein2.7.7.490.536
1c1bGCAGag-Pol polyprotein2.7.7.490.527
3ffi3OBGag-Pol polyprotein2.7.7.490.523
3bgrT27Gag-Pol polyprotein2.7.7.490.509
3mec65BGag-Pol polyprotein2.7.7.490.509
3is9AC7Gag-Pol polyprotein2.7.7.490.508
1tl3H20Gag-Pol polyprotein2.7.7.490.507
3irxUDRGag-Pol polyprotein2.7.7.490.507
1tl1H18Gag-Pol polyprotein2.7.7.490.503
4rw6494Gag-Pol polyprotein2.7.7.490.482
3m8qDJZGag-Pol polyprotein2.7.7.490.481
3meeT27Gag-Pol polyprotein2.7.7.490.481
1s9eADBGag-Pol polyprotein2.7.7.490.478
3med65BGag-Pol polyprotein2.7.7.490.478
4kko1REGag-Pol polyprotein2.7.7.490.478
1tktH12Gag-Pol polyprotein2.7.7.490.477
4ko0JLJGag-Pol polyprotein2.7.7.490.475
1tkzH16Gag-Pol polyprotein2.7.7.490.471
1rt4UC1Gag-Pol polyprotein2.7.7.490.470
2hnzPC0Gag-Pol polyprotein2.7.7.490.470
3m8p65BGag-Pol polyprotein2.7.7.490.470
3megT27Gag-Pol polyprotein2.7.7.490.467
1s6qTPBGag-Pol polyprotein2.7.7.490.465
3dmjGWEPol protein/0.463
3lanKBTGag-Pol polyprotein2.7.7.490.462
2rf2MRXGag-Pol polyprotein2.7.7.490.459
4rw4494Gag-Pol polyprotein2.7.7.490.459
3lalKRVGag-Pol polyprotein2.7.7.490.458
1vruAAPGag-Pol polyprotein2.7.7.490.457
2vg7NNIGag-Pol polyprotein2.7.7.490.457
1revTB9Gag-Pol polyprotein2.7.7.490.456
4mfb29TGag-Pol polyprotein2.7.7.490.456
1hpzAAPGag-Pol polyprotein2.7.7.490.455
1tvrTB9Gag-Pol polyprotein2.7.7.490.455
1eetBFUGag-Pol polyprotein2.7.7.490.454
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.454
3i0rRT3Gag-Pol polyprotein2.7.7.490.451
1s1wUC1Gag-Pol polyprotein2.7.7.490.450
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.450
3sgtP09Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)/0.449
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.448
1rt5UC2Gag-Pol polyprotein2.7.7.490.445
2vg5NNCGag-Pol polyprotein2.7.7.490.441