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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4hfp15UProthrombin3.4.21.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4hfp15UProthrombin3.4.21.51.000
4e7r0NWProthrombin3.4.21.50.523
4ax9N5NProthrombin3.4.21.50.520
2cf9348Prothrombin3.4.21.50.509
1gj5130Prothrombin3.4.21.50.506
1xm1GAHProthrombin3.4.21.50.504
3qdzPRO_ALA_PRO_ARGProthrombin3.4.21.50.502
2bvs2CEProthrombin3.4.21.50.500
5cmx0G6Prothrombin3.4.21.50.498
4rn615UProthrombin3.4.21.50.497
1o2g696Prothrombin3.4.21.50.495
1jwtBLIProthrombin3.4.21.50.493
2cf8ESHProthrombin3.4.21.50.488
1ypeUIPProthrombin3.4.21.50.486
1d3pBT3Prothrombin3.4.21.50.480
1w7gMIUProthrombin3.4.21.50.479
2r2mI50Prothrombin3.4.21.50.477
1ypgUIRProthrombin3.4.21.50.476
2cn0F25Prothrombin3.4.21.50.475
2jh6894Prothrombin3.4.21.50.475
1c4uIH1Prothrombin3.4.21.50.474
2v3oI26Prothrombin3.4.21.50.473
1o5gCR9Prothrombin3.4.21.50.471
1nm6L86Prothrombin3.4.21.50.470
2jh0701Prothrombin3.4.21.50.470
2jh5895Prothrombin3.4.21.50.470
2zda32UProthrombin3.4.21.50.470
1c4vIH2Prothrombin3.4.21.50.469
1d3dBZTProthrombin3.4.21.50.469
1d6w00RProthrombin3.4.21.50.469
3hatGLY_VAL_ARG_RNGProthrombin3.4.21.50.469
1gj4132Prothrombin3.4.21.50.468
1oytFSNProthrombin3.4.21.50.468
4ayy9MXProthrombin3.4.21.50.468
1mu8CDBProthrombin3.4.21.50.467
2zhe13UProthrombin3.4.21.50.467
2zhf49UProthrombin3.4.21.50.467
1t4v14AProthrombin3.4.21.50.459
2zfq45UProthrombin3.4.21.50.459
3dhk23UProthrombin3.4.21.50.458
4az29MUProthrombin3.4.21.50.456
1ypjUIBProthrombin3.4.21.50.453
1mu6CDAProthrombin3.4.21.50.451
2pksG44Prothrombin3.4.21.50.446
1riwOSCProthrombin3.4.21.50.445
2uuk897Prothrombin3.4.21.50.445
4ayv9MQProthrombin3.4.21.50.444
1sb1165Prothrombin3.4.21.50.442
2a2xNA9Prothrombin3.4.21.50.442
2ziq26UProthrombin3.4.21.50.441
3egkM18Prothrombin3.4.21.50.440
7kmeACE_0BN_CHG_PRRProthrombin3.4.21.50.440