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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.291.000
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.642
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.630
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.564
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.549
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.547
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.535
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.521
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.513
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.512
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.511
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.508
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.504
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.495
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.486
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.477
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.464
4l9kEHFSerum albumin/0.452
1hbvGANGag-Pol polyprotein/0.451
1nzyBCA4-chlorobenzoyl coenzyme A dehalogenase3.8.1.70.448
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.448
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.445
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.440