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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4f4qFADDecaprenylphosphoryl-beta-D-ribose oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4f4qFADDecaprenylphosphoryl-beta-D-ribose oxidase/1.000
4fdpFADDecaprenylphosphoryl-beta-D-ribose oxidase/0.598
4fdnFADDecaprenylphosphoryl-beta-D-ribose oxidase/0.585
4fehFADDecaprenylphosphoryl-beta-D-ribose oxidase/0.561
2q4wFADCytokinin dehydrogenase 71.5.99.120.490
1f0xFADD-lactate dehydrogenase1.1.1.280.486
3b70NAPEnoyl reductase LovC10.481
1egeFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.466
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.462
3b6zCO7Enoyl reductase LovC10.462
1t9gFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.460
3gqvNAPEnoyl reductase LovC10.458
1egdFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.453
2a1tFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.451
4pytFADUDP-N-acetylenolpyruvoylglucosamine reductase/0.451
2uuvFADAlkyldihydroxyacetonephosphate synthase2.5.1.260.450
3jynNDPQuinone oxidoreductase/0.448
1hskFADUDP-N-acetylenolpyruvoylglucosamine reductase/0.445
3kybFADUDP-galactopyranose mutase5.4.99.90.444
4jayFADUDP-N-acetylenolpyruvoylglucosamine reductase/0.444
4xgiNADGlutamate dehydrogenase/0.444
3pm9FADPutative oxidoreductase/0.442
3w8wFADPutative FAD-dependent oxygenase EncM/0.442
1wamFADUDP-galactopyranose mutase5.4.99.90.440
4bc7FADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.440