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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4echFADPolyamine oxidase FMS1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4echFADPolyamine oxidase FMS1/1.000
3cntFADPolyamine oxidase FMS1/0.634
3cndFADPolyamine oxidase FMS1/0.625
1xpqFADPolyamine oxidase FMS1/0.612
3cn8FADPolyamine oxidase FMS1/0.594
2iw5FADLysine-specific histone demethylase 1A10.550
5l3dFADLysine-specific histone demethylase 1A10.545
4fwjFADLysine-specific histone demethylase 1B10.534
2uxxFAJLysine-specific histone demethylase 1A10.531
4i58FADCyclohexylamine Oxidase/0.519
2yg7FADPutrescine oxidase/0.509
4guuFA9Lysine-specific histone demethylase 1B10.508
3k7tFAD6-hydroxy-L-nicotine oxidase/0.500
3zdnFADMonoamine oxidase N1.4.3.40.500
2yg4FADPutrescine oxidase/0.491
3rhaFDAPutrescine oxidase/0.484
3kpfFADPolyamine oxidase1.5.3.140.481
3bi2FADPolyamine oxidase FMS1/0.478
1f8rFADL-amino-acid oxidase1.4.3.20.469
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.469
4gdpFADPolyamine oxidase FMS1/0.468
3qj4FADRenalase/0.467
1h81FADPolyamine oxidase1.5.3.140.464
2babFADPutative aminooxidase/0.460
2jb1FADL-amino acid oxidase/0.455
2ba9FADPutative aminooxidase/0.453
2bacFADPutative aminooxidase/0.451
1tdkFADL-amino-acid oxidase1.4.3.20.449
3bi5FADPolyamine oxidase FMS1/0.441
1tdnFADL-amino-acid oxidase1.4.3.20.440