sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4a62 | ANP | Plasmid segregation protein ParM |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4a62 | ANP | Plasmid segregation protein ParM | / | 1.000 | |
| 2zgz | GNP | Plasmid segregation protein ParM | / | 0.462 | |
| 4a61 | ANP | Plasmid segregation protein ParM | / | 0.462 | |
| 4ehu | ANP | 2-hydroxyisocaproyl-CoA dehydratase activator | / | 0.462 | |
| 4jld | ADP | Adenylate kinase | / | 0.461 | |
| 5eox | ADP | Type 4 fimbrial biogenesis protein PilM | / | 0.457 | |
| 4a2a | ATP | Cell division protein FtsA | / | 0.450 | |
| 4a2b | AGS | Cell division protein FtsA | / | 0.450 | |
| 4b9q | ATP | Chaperone protein DnaK | / | 0.445 | |
| 4wq5 | ATP | tRNA N6-adenosine threonylcarbamoyltransferase | / | 0.443 | |
| 4ydu | ADP | tRNA N6-adenosine threonylcarbamoyltransferase | / | 0.443 | |
| 2r7b | 253 | 3-phosphoinositide-dependent protein kinase 1 | 2.7.11.1 | 0.440 |