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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3we0FADLysine 2-monooxygenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3we0FADLysine 2-monooxygenase/1.000
3kveFADL-amino-acid oxidase/0.524
1f8rFADL-amino-acid oxidase1.4.3.20.521
1f8sFADL-amino-acid oxidase1.4.3.20.508
2babFADPutative aminooxidase/0.493
2e1mFADL-glutamate oxidase/0.481
3bi2FADPolyamine oxidase FMS1/0.476
2b9yFADPutative aminooxidase/0.469
2yg5FADPutrescine oxidase/0.469
4fwjFADLysine-specific histone demethylase 1B10.468
3kpfFADPolyamine oxidase1.5.3.140.465
3cn8FADPolyamine oxidase FMS1/0.464
2uxxFAJLysine-specific histone demethylase 1A10.463
2yg4FADPutrescine oxidase/0.461
4echFADPolyamine oxidase FMS1/0.456
3cntFADPolyamine oxidase FMS1/0.455
2dw4FADLysine-specific histone demethylase 1A10.454
3bi5FADPolyamine oxidase FMS1/0.454
4gdpFADPolyamine oxidase FMS1/0.453
1h83FADPolyamine oxidase1.5.3.140.452
2jaeFADL-amino acid oxidase/0.449
3cndFADPolyamine oxidase FMS1/0.447
2hkoFADLysine-specific histone demethylase 1A10.446
3zdnFADMonoamine oxidase N1.4.3.40.446
3k7tFAD6-hydroxy-L-nicotine oxidase/0.445
1xpqFADPolyamine oxidase FMS1/0.443
2jb1FADL-amino acid oxidase/0.443
3kkjFADRenalase/0.441
2vvlFADMonoamine oxidase N1.4.3.40.440
3k7mFAD6-hydroxy-L-nicotine oxidase/0.440