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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vrwYS5Vitamin D3 receptor

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vrwYS5Vitamin D3 receptor/1.000
3vruYS3Vitamin D3 receptor/0.713
3vrvYSDVitamin D3 receptor/0.686
1rk3VDXVitamin D3 receptor/0.661
3w5rLOAVitamin D3 receptor/0.657
3vt45YIVitamin D3 receptor/0.649
4ia3BIVVitamin D3 receptor A/0.648
4ia7BIVVitamin D3 receptor A/0.646
1rkhVD2Vitamin D3 receptor/0.644
2o4rVD5Vitamin D3 receptor/0.644
4g1z0VPVitamin D3 receptor A/0.642
2zl9VDAVitamin D3 receptor/0.639
4iteTEYVitamin D3 receptor/0.639
4rupH97Vitamin D3 receptor A/0.637
2zlcVDXVitamin D3 receptor/0.636
2hcdBIVVitamin D3 receptor A/0.635
2hamC33Vitamin D3 receptor/0.634
4ia1BIVVitamin D3 receptor A/0.633
3vt65YIVitamin D3 receptor/0.632
1s19MC9Vitamin D3 receptor/0.631
2hasC3OVitamin D3 receptor/0.630
3a783EVVitamin D3 receptor/0.630
1txiTX5Vitamin D3 receptor/0.629
3w0jT08Vitamin D3 receptor/0.628
1ie8KH1Vitamin D3 receptor/0.627
2hb7O1CVitamin D3 receptor/0.626
3vt3VDXVitamin D3 receptor/0.625
3vt5YI2Vitamin D3 receptor/0.625
1rjkVDZVitamin D3 receptor/0.624
3vt7VDXVitamin D3 receptor/0.624
2zlaVDBVitamin D3 receptor/0.623
4ruoBIVVitamin D3 receptor A/0.621
1db1VDXVitamin D3 receptor/0.620
4g1y0VOVitamin D3 receptor A/0.620
2hb8MVDVitamin D3 receptor/0.617
4g1d0VKVitamin D3 receptor A/0.617
4g210VPVitamin D3 receptor A/0.614
4ia2BIVVitamin D3 receptor A/0.613
1rkgVD1Vitamin D3 receptor/0.612
3w0aDS5Vitamin D3 receptor/0.612
3dr1C5DVitamin D3 receptor A/0.611
4fhh0U3Vitamin D3 receptor A/0.611
1s0zEB1Vitamin D3 receptor/0.608
3w0gW07Vitamin D3 receptor/0.607
4itfTFYVitamin D3 receptor/0.605
3kpzZNEVitamin D3 receptor/0.604
4fhi0S4Vitamin D3 receptor A/0.604
2o4jVD4Vitamin D3 receptor/0.603
2harOCCVitamin D3 receptor/0.602
3w0iO11Vitamin D3 receptor/0.601
3vtdTKDVitamin D3 receptor/0.600
3vrtYS2Vitamin D3 receptor/0.597
3vt9YI4Vitamin D3 receptor/0.596
3w0yDS4Vitamin D3 receptor/0.596
2hbhXE4Vitamin D3 receptor A/0.593
2hc4VDXVitamin D3 receptor A/0.593
4g2h0VQVitamin D3 receptor A/0.593
3w0hW12Vitamin D3 receptor/0.591
3vtbTKAVitamin D3 receptor/0.590
4g20484Vitamin D3 receptor A/0.586
1ie9VDXVitamin D3 receptor/0.583
3vtcTK3Vitamin D3 receptor/0.582
4rujVDXVitamin D3 receptor A/0.580
3vt8YI3Vitamin D3 receptor/0.579
3w5p4OAVitamin D3 receptor/0.577
3w5tLHPVitamin D3 receptor/0.576
4q0a4OAVitamin D3 receptor A/0.574
3m7rVDXVitamin D3 receptor/0.560
3w0c6DSVitamin D3 receptor/0.549
3w5q3KLVitamin D3 receptor/0.530
1iyzNDPProbable quinone oxidoreductase/0.452
2jn3JN3Fatty acid-binding protein, liver/0.449
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.445
4g2i0VQVitamin D3 receptor/0.445
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
1ysx4EBSerum albumin/0.443
4l9kEHFSerum albumin/0.443
1xuoLA1Integrin alpha-L/0.442
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.441
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.440