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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vf60H6Glucokinase2.7.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vf60H6Glucokinase2.7.1.21.000
4dhyS41Glucokinase2.7.1.20.555
3s41S41Glucokinase2.7.1.20.538
4ixc1JDGlucokinase2.7.1.20.535
4iwv1J9Glucokinase2.7.1.20.531
4bfyZVYPantothenate kinase2.7.1.330.482
3a0iAJIGlucokinase2.7.1.20.470
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.468
3g70A5TRenin3.4.23.150.464
3o4rNAPDehydrogenase/reductase SDR family member 41.1.1.1840.463
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.462
5dp2NAPCurF/0.461
4gz612VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit/0.456
5ab6CAANonspecific lipid-transfer protein, putative/0.455
2bf7HBIPteridine reductase 11.5.1.330.453
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.453
2iyaZIOOleandomycin glycosyltransferase/0.452
5ab7MLCNonspecific lipid-transfer protein, putative/0.452
3vjcZGASqualene synthase2.5.1.210.450
4bb3KKAIsopenicillin N synthase1.21.3.10.448
4xoqF42Coenzyme F420:L-glutamate ligase/0.448
4i6f1C7Serine/threonine-protein kinase PLK22.7.11.210.447
1xf0ASDAldo-keto reductase family 1 member C3/0.444
3up3XCAaceDAF-12/0.444
1pkfEPDEpothilone C/D epoxidase1.140.443
1yc2NADNAD-dependent protein deacylase 2/0.443
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.443
3gw9VNILanosterol 14-alpha-demethylase/0.443
4q71FADBifunctional protein PutA/0.443
1an5CB3Thymidylate synthase/0.442
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.442
1ygkRRCPyridoxal kinase2.7.1.350.442
1yhjR6CPyridoxal kinase2.7.1.350.442
4dch4DCGlucokinase2.7.1.20.442
4iah1DXAlr2278 protein/0.442
4isf1FXGlucokinase2.7.1.20.442
1pz1NAPGeneral stress protein 69/0.440
3a1l2CCCytochrome P450/0.440
4j531J4Serine/threonine-protein kinase PLK12.7.11.210.440