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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3uph0C1Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3uph0C1Genome polyprotein2.7.7.481.000
3u4o08EGenome polyprotein2.7.7.480.758
3u4r08FGenome polyprotein2.7.7.480.710
3tyvHI3Genome polyprotein2.7.7.480.690
4mka2AYGenome polyprotein2.7.7.480.640
3igvB80Genome polyprotein2.7.7.480.639
2yoj8Y6Genome polyprotein2.7.7.480.621
3csoXNIGenome polyprotein2.7.7.480.619
3d5m4MSGenome polyprotein2.7.7.480.619
3hkyIX6Genome polyprotein2.7.7.480.611
3ska053Genome polyprotein2.7.7.480.611
4mk928RGenome polyprotein2.7.7.480.611
2giqNN2Genome polyprotein2.7.7.480.603
3h59H59Genome polyprotein2.7.7.480.600
3ske054Genome polyprotein2.7.7.480.597
4mkb28VGenome polyprotein2.7.7.480.597
3bsc2PDGenome polyprotein2.7.7.480.589
3hkwIX6Genome polyprotein2.7.7.480.585
3g86T18Genome polyprotein2.7.7.480.574
3h2lYAKGenome polyprotein2.7.7.480.573
3d28B34Genome polyprotein2.7.7.480.567
4mk728OGenome polyprotein2.7.7.480.565
2gc8885Polyprotein/0.562
4eaw0NQGenome polyprotein2.7.7.480.561
3br9DEYGenome polyprotein2.7.7.480.555
3gynB42Genome polyprotein2.7.7.480.547
4ih71ERGenome polyprotein2.7.7.480.540
3golXNDGenome polyprotein2.7.7.480.537
4ih61EPGenome polyprotein2.7.7.480.537
3gnvXNZGenome polyprotein2.7.7.480.536
4iz02BIGenome polyprotein2.7.7.480.519
3upi0C2Genome polyprotein2.7.7.480.504
3h5uH5UGenome polyprotein2.7.7.480.489
3bsa1PDGenome polyprotein2.7.7.480.483
2fvc888Polyprotein/0.480
3co93MSGenome polyprotein2.7.7.480.480
3cdeN3HGenome polyprotein2.7.7.480.477
3e51N35Genome polyprotein2.7.7.480.470
1z4uPH9Polyprotein/0.466
3cwj321Genome polyprotein2.7.7.480.463
4mk828QGenome polyprotein2.7.7.480.462
3h5sH5SGenome polyprotein2.7.7.480.461
1yvfPH7Polyprotein/0.445