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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3u4lATPActin, cytoplasmic 1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3u4lATPActin, cytoplasmic 1/1.000
1rgiATPActin, alpha skeletal muscle/0.557
4jhdANPActin-5C/0.554
5ce3ATPActin/0.538
1nmdATPMajor actin/0.533
4k42ADPActin, alpha skeletal muscle/0.524
3mn6ATPActin-5C/0.517
4ci6ATPActin/0.516
1t44ATPActin, alpha skeletal muscle/0.515
1h1vATPActin, alpha skeletal muscle/0.510
1lotATPActin, alpha skeletal muscle/0.510
3mn9ATPActin-5C/0.510
4pkgATPActin, alpha skeletal muscle/0.508
3el2ATPActin-5C/0.506
2v51ATPActin, alpha skeletal muscle/0.505
1yxqATPActin, alpha skeletal muscle/0.503
3m6gATPActin, alpha skeletal muscle/0.502
3tu5ATPActin, alpha skeletal muscle/0.499
3a5mATPMajor actin/0.496
4rwtANPActin-5C/0.496
1nm1ATPMajor actin/0.493
4cbxATPActin-2/0.493
4pl8ATPActin, alpha skeletal muscle/0.491
2q36ATPActin, alpha skeletal muscle/0.490
1ijjATPActin, alpha skeletal muscle/0.483
1kxpATPActin, alpha skeletal muscle/0.483
1c0fATPMajor actin/0.480
3u9dATPActin, alpha skeletal muscle/0.479
4k43ADPActin, alpha skeletal muscle/0.478
3mn7ATPActin-5C/0.474
1qz5ATPActin, alpha skeletal muscle/0.473
4pkhADPActin, alpha skeletal muscle/0.472
3ffkATPActin, alpha skeletal muscle/0.471
3m1fATPActin, alpha skeletal muscle/0.471
4k41ATPActin, alpha skeletal muscle/0.468
1eqyATPActin, alpha skeletal muscle/0.466
4m63ATPActin-5C/0.464
2p9kATPActin-related protein 2/0.463
3dawATPActin, alpha skeletal muscle/0.461
2q97ATPActin, alpha skeletal muscle/0.458
4pkiATPActin, alpha skeletal muscle/0.457
1s22ATPActin, alpha skeletal muscle/0.456
3eksATPActin-5C/0.453
2oanATPActin, cytoplasmic 1/0.452
1mduATPActin, alpha skeletal muscle/0.443
1nlvATPMajor actin/0.443
3w3dATPActin, gamma-enteric smooth muscle/0.441