sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3sl2 | ATP | Sensor histidine kinase WalK |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3sl2 | ATP | Sensor histidine kinase WalK | / | 1.000 | |
| 4f4d | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.480 | |
| 1i59 | ANP | Chemotaxis protein CheA | 2.7.13.3 | 0.474 | |
| 4biw | ANP | Sensor histidine kinase CpxA | / | 0.458 | |
| 1i5c | ADP | Chemotaxis protein CheA | 2.7.13.3 | 0.456 | |
| 5c93 | ACP | Two-component system histidine protein kinase | / | 0.456 | |
| 3gw9 | VNI | Lanosterol 14-alpha-demethylase | / | 0.452 | |
| 3swq | EPU | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | / | 0.448 | |
| 3uk6 | ADP | RuvB-like 2 | 3.6.4.12 | 0.448 | |
| 2yvw | EPU | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | / | 0.447 | |
| 4g3j | VNT | Lanosterol 14-alpha-demethylase | / | 0.446 | |
| 4r7u | UD1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | / | 0.446 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.444 | |
| 3dge | ADP | Sensor histidine kinase | / | 0.444 | |
| 4ipw | 1G7 | Mycocyclosin synthase | 1.14.21.9 | 0.444 | |
| 2e9a | B28 | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) | 2.5.1.31 | 0.441 |