Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3s2uUD1UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3s2uUD1UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase/1.000
1nlmUD1UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase/0.475
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.462
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.453
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.451
2givACOHistone acetyltransferase KAT8/0.451
4ambDUDPutative glycosyl transferase/0.451
4kzoNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.450
5dp2NAPCurF/0.450
2ebaFADPutative glutaryl-CoA dehydrogenase/0.445
3bg7FADPyranose 2-oxidase/0.444
4q72FADBifunctional protein PutA/0.444
5eaiFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440