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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3qlhT27Gag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3qlhT27Gag-Pol polyprotein2.7.7.491.000
4ifvT27Gag-Pol polyprotein2.7.7.490.694
4id5T27Gag-Pol polyprotein2.7.7.490.657
4i2pG73Gag-Pol polyprotein2.7.7.490.628
4i2q1BTGag-Pol polyprotein2.7.7.490.610
4g1qT27Gag-Pol polyprotein2.7.7.490.605
3is9AC7Gag-Pol polyprotein2.7.7.490.599
2ze2T27Gag-Pol polyprotein2.7.7.490.593
2zd1T27Gag-Pol polyprotein2.7.7.490.586
4ig3T27Gag-Pol polyprotein2.7.7.490.545
3bgrT27Gag-Pol polyprotein2.7.7.490.542
3irxUDRGag-Pol polyprotein2.7.7.490.526
1c1bGCAGag-Pol polyprotein2.7.7.490.520
3ffi3OBGag-Pol polyprotein2.7.7.490.512
1tl3H20Gag-Pol polyprotein2.7.7.490.509
1rt4UC1Gag-Pol polyprotein2.7.7.490.504
1tktH12Gag-Pol polyprotein2.7.7.490.504
3mec65BGag-Pol polyprotein2.7.7.490.504
4kfbT27Gag-Pol polyprotein2.7.7.490.501
4rw6494Gag-Pol polyprotein2.7.7.490.500
1tl1H18Gag-Pol polyprotein2.7.7.490.497
5cyqT27Gag-Pol polyprotein2.7.7.490.497
4ko0JLJGag-Pol polyprotein2.7.7.490.496
3lanKBTGag-Pol polyprotein2.7.7.490.492
2hnzPC0Gag-Pol polyprotein2.7.7.490.485
3dmjGWEPol protein/0.483
1eetBFUGag-Pol polyprotein2.7.7.490.482
2ban357Gag-Pol polyprotein2.7.7.490.481
3m8qDJZGag-Pol polyprotein2.7.7.490.481
3meeT27Gag-Pol polyprotein2.7.7.490.481
1tvrTB9Gag-Pol polyprotein2.7.7.490.480
3m8p65BGag-Pol polyprotein2.7.7.490.480
3lamKRPGag-Pol polyprotein2.7.7.490.477
3med65BGag-Pol polyprotein2.7.7.490.477
1tkzH16Gag-Pol polyprotein2.7.7.490.472
1vruAAPGag-Pol polyprotein2.7.7.490.468
4kko1REGag-Pol polyprotein2.7.7.490.467
3megT27Gag-Pol polyprotein2.7.7.490.466
3lalKRVGag-Pol polyprotein2.7.7.490.465
1rt5UC2Gag-Pol polyprotein2.7.7.490.463
1s6qTPBGag-Pol polyprotein2.7.7.490.463
1hpzAAPGag-Pol polyprotein2.7.7.490.460
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.460
1s9eADBGag-Pol polyprotein2.7.7.490.458
4mfb29TGag-Pol polyprotein2.7.7.490.456
1revTB9Gag-Pol polyprotein2.7.7.490.455
1hnvTBOGag-Pol polyprotein2.7.7.490.454
1ikyMSDGag-Pol polyprotein2.7.7.490.451
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.447
1fmjRTLRetinol dehydratase/0.445
1s1wUC1Gag-Pol polyprotein2.7.7.490.445
1hniAAAGag-Pol polyprotein2.7.7.490.443
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.442
2b5j3ACGag-Pol polyprotein2.7.7.490.441
1jlcFTCGag-Pol polyprotein2.7.7.490.440
3gc8B45Mitogen-activated protein kinase 112.7.11.240.440