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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3p97SAMGenome polyprotein2.1.1.56

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3p97SAMGenome polyprotein2.1.1.561.000
4ctjSAMGenome polyprotein/0.660
3p8zSAHGenome polyprotein2.1.1.560.615
2p41SAHGenome polyprotein/0.610
3p8z36AGenome polyprotein2.1.1.560.599
5jjrSAHGenome polyprotein/0.597
4k6mSAHGenome polyprotein/0.596
2pxaSAHGenome polyprotein2.7.7.480.588
3eldSFGMethyltransferase/0.578
5jjsSAHGenome polyprotein/0.577
3eluSAMMethyltransferase/0.575
3elySAHMethyltransferase/0.564
2xbmSAHGenome polyprotein/0.557
3evcSAHGenome polyprotein2.1.1.560.555
2px5SAHGenome polyprotein2.7.7.480.548
4ctkSAMGenome polyprotein/0.534
2wa2SAMGenome polyprotein/0.532
2px2SAHGenome polyprotein2.7.7.480.511
2oxtSAMGenome polyprotein/0.502
3evgSAHGenome polyprotein2.1.1.560.490
3lkzSFGGenome polyprotein/0.471
1e5qNDPSaccharopine dehydrogenase [NADP(+), L-glutamate-forming]1.5.1.100.449
4opiFDAConserved Archaeal protein/0.446
2p3qSAHGenome polyprotein/0.442