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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3oewNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3oewNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.91.000
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.873
3oeyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.792
2aq8NAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.758
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.713
4dtiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.702
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.681
2pr2DG1Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.632
1enyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.616
2ntvP1HEnoyl-[acyl-carrier-protein] reductase [NADH]/0.612
2aqhNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.601
2aqiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.589
2nv6ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.580
1zidZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.579
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.566
5cpbNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.551
2aqkNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.544
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.540
2ie0ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.537
4bqpNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.535
1enzNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.528
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.528
2idzZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.527
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.526
1p44NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.518
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.504
2iebZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.495
3uicNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.491
2b36NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.481
3g5hYTTMycocyclosin synthase1.14.21.90.481
2b37NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.474
3nr4PYVAbscisic acid receptor PYL2/0.474
2y3sTIRTamL/0.473
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.466
4ipw1G7Mycocyclosin synthase1.14.21.90.466
2y4gTIRTamL/0.463
1ee9NADMethylenetetrahydrofolate dehydrogenase [NAD(+)]1.5.1.150.462
4r20AERCytochrome P450 family 17 polypeptide 2/0.461
1jioDEB6-deoxyerythronolide B hydroxylase/0.460
2b35NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.460
4q72FADBifunctional protein PutA/0.460
2vn0TDZCytochrome P450 2C8/0.459
2y3rTRKTamL/0.459
4qedNAPElxO/0.459
5hs1VORLanosterol 14-alpha demethylase/0.459
5koiNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.459
1g6kNADGlucose 1-dehydrogenase1.1.1.470.458
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.456
4ips1G4Mycocyclosin synthase1.14.21.90.455
4q71FADBifunctional protein PutA/0.454
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.453
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.452
5b1yNDP3-oxoacyl-[acyl-carrier-protein] reductase/0.450
4q73FADBifunctional protein PutA/0.449
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.448
2jb4A14Isopenicillin N synthase1.21.3.10.448
2nnhREACytochrome P450 2C8/0.448
3s1dZIRCytokinin dehydrogenase 11.5.99.120.447
1xe55FEPlasmepsin-23.4.23.390.446
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.446
2vbdV10Isopenicillin N synthase1.21.3.10.445
3uylTYDProbable NDP-rhamnosyltransferase/0.445
4lxjLANLanosterol 14-alpha demethylase1.14.13.700.444
3h3t16HCollagen type IV alpha-3-binding protein/0.443
1xddAAYIntegrin alpha-L/0.442
3wmxNADNAD dependent epimerase/dehydratase/0.442
3zoiM2WIsopenicillin N synthase1.21.3.10.442
4a81DXCMajor pollen allergen Bet v 1-A/0.442
4rlh0WEEnoyl-[acyl-carrier-protein] reductase [NADH]/0.442
1jipKTN6-deoxyerythronolide B hydroxylase/0.441
2zbaZBATrichothecene 3-O-acetyltransferase/0.441
4qecNAPElxO/0.441
2jfgUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.440
4ejmNAPPutative zinc-binding dehydrogenase/0.440