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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3oev3OEProteasome subunit beta type-53.4.25.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3oev3OEProteasome subunit beta type-53.4.25.11.000
3oev3OEProteasome subunit beta type-63.4.25.11.000
3sdkP3NProteasome subunit beta type-53.4.25.10.658
3sdkP3NProteasome subunit beta type-63.4.25.10.658
3sdi3SDProteasome subunit beta type-53.4.25.10.599
3sdi3SDProteasome subunit beta type-63.4.25.10.599
1dxqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.469
1pnvTYDdTDP-epi-vancosaminyltransferase2.4.1.3110.460
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.456
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.456
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.456
4yryFADGlutamate synthase, beta subunit/0.446
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.440
4nwzFADFAD-dependent pyridine nucleotide-disulfide oxidoreductase/0.440
4ocvANPAminoglycoside phosphotransferase/0.440