Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/1.000
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.596
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.550
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.526
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.511
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.505
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.504
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.498
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.497
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.497
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.493
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.493
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.492
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.492
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.491
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.487
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.478
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.477
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.475
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.474
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.474
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.471
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.467
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.467
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.464
1nq5NADGlyceraldehyde-3-phosphate dehydrogenase/0.454
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.453
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.451
3qv1NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.449