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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3lnmNAPVoltage-gated potassium channel subunit beta-2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3lnmNAPVoltage-gated potassium channel subunit beta-2/1.000
4jtcNAPVoltage-gated potassium channel subunit beta-2/0.649
2r9rNAPVoltage-gated potassium channel subunit beta-2/0.601
4jtdNAPVoltage-gated potassium channel subunit beta-2/0.573
4jtaNAPVoltage-gated potassium channel subunit beta-2/0.547
4aubNAPL-glyceraldehyde 3-phosphate reductase1.1.10.546
2clpNDPAflatoxin B1 aldehyde reductase member 3/0.518
2c91NAPAflatoxin B1 aldehyde reductase member 2/0.516
1lqaNDPProtein tas/0.505
1ah4NAPAldose reductase1.1.1.210.463
2j8tNAPAldose reductase1.1.1.210.456
3q65NAPAldose reductase1.1.1.210.450
3q67NAPAldose reductase1.1.1.210.448
4pmjNAPPutative oxidoreductase/0.448
2pfhNDPAldose reductase1.1.1.210.447
1c9wNAPAldose reductase-related protein 2/0.446
3caqNDP3-oxo-5-beta-steroid 4-dehydrogenase/0.446
4g5dNDPProstaglandin F synthase1.1.1.1880.446
3v36NAPAldose reductase1.1.1.210.443
1pz1NAPGeneral stress protein 69/0.442
2iq0NAPAldose reductase1.1.1.210.441
3h7rNAPAldo-keto reductase family 4 member C8/0.441