sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3iaf | TPP | Benzaldehyde lyase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3iaf | TPP | Benzaldehyde lyase | / | 1.000 | |
| 2uz1 | TPP | Benzaldehyde lyase | / | 0.517 | |
| 2ag1 | TPP | Benzaldehyde lyase | / | 0.495 | |
| 4k9p | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.476 | |
| 4jub | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.475 | |
| 4juf | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.471 | |
| 2ag0 | TPP | Benzaldehyde lyase | / | 0.470 | |
| 4k9o | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.469 | |
| 1mcz | TDP | Benzoylformate decarboxylase | 4.1.1.7 | 0.467 | |
| 2v3w | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.448 | |
| 4k9n | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.446 | |
| 2a87 | FAD | Thioredoxin reductase | 1.8.1.9 | 0.445 | |
| 4amb | DUD | Putative glycosyl transferase | / | 0.443 | |
| 4juc | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.442 | |
| 3tne | RIT | Candidapepsin-1 | 3.4.23.24 | 0.440 |