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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gyiFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3gyiFADCholesterol oxidase1.1.3.61.000
4rekFADCholesterol oxidase1.1.3.60.887
4xxgFADCholesterol oxidase1.1.3.60.875
3gyjFADCholesterol oxidase1.1.3.60.864
1n4uFAECholesterol oxidase1.1.3.60.857
4xwrFADCholesterol oxidase1.1.3.60.846
1b8sFADCholesterol oxidase1.1.3.60.837
1mxtFAECholesterol oxidase1.1.3.60.834
1ijhFADCholesterol oxidase1.1.3.60.806
4u2lSFDCholesterol oxidase1.1.3.60.786
1n4vFADCholesterol oxidase1.1.3.60.731
1b4vFADCholesterol oxidase1.1.3.60.719
1cboFADCholesterol oxidase1.1.3.60.677
3cnjFADCholesterol oxidase1.1.3.60.677
1n4wFADCholesterol oxidase1.1.3.60.652
1cc2FADCholesterol oxidase1.1.3.60.649
4u2sFDACholesterol oxidase1.1.3.60.644
1n1pFADCholesterol oxidase1.1.3.60.633
3coxFADCholesterol oxidase1.1.3.60.570
3b6dFAECholesterol oxidase1.1.3.60.567
4qi5FADCellobiose dehydrogenase/0.565
4qi7FADCellobiose dehydrogenase/0.548
4qi4FADCellobiose dehydrogenase/0.544
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.517
2gewFADCholesterol oxidase1.1.3.60.490
5hsaFASAlcohol oxidase 11.1.3.130.487
1galFADGlucose oxidase1.1.3.40.478
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.474
4udqFAD5-(hydroxymethyl)furfural oxidase/0.472
1cf3FADGlucose oxidase1.1.3.40.468
4yntFDAGlucose oxidase, putative/0.463
4mihFADPyranose 2-oxidase1.1.3.100.462
4udrFAD5-(hydroxymethyl)furfural oxidase/0.459
3k4nFADPyranose 2-oxidase/0.446