Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gnvXNZGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3gnvXNZGenome polyprotein2.7.7.481.000
3ske054Genome polyprotein2.7.7.480.627
3g86T18Genome polyprotein2.7.7.480.573
3tyvHI3Genome polyprotein2.7.7.480.571
3csoXNIGenome polyprotein2.7.7.480.563
3h59H59Genome polyprotein2.7.7.480.561
3u4o08EGenome polyprotein2.7.7.480.559
3ska053Genome polyprotein2.7.7.480.558
3d5m4MSGenome polyprotein2.7.7.480.557
3d28B34Genome polyprotein2.7.7.480.556
3hkyIX6Genome polyprotein2.7.7.480.550
3u4r08FGenome polyprotein2.7.7.480.547
4mka2AYGenome polyprotein2.7.7.480.546
4mkb28VGenome polyprotein2.7.7.480.546
3igvB80Genome polyprotein2.7.7.480.542
3upi0C2Genome polyprotein2.7.7.480.536
4mk928RGenome polyprotein2.7.7.480.531
3h2lYAKGenome polyprotein2.7.7.480.529
3uph0C1Genome polyprotein2.7.7.480.528
2gc8885Polyprotein/0.519
3bsc2PDGenome polyprotein2.7.7.480.514
1yvfPH7Polyprotein/0.512
2giqNN2Genome polyprotein2.7.7.480.512
4eaw0NQGenome polyprotein2.7.7.480.510
3gynB42Genome polyprotein2.7.7.480.509
4ih61EPGenome polyprotein2.7.7.480.494
3br9DEYGenome polyprotein2.7.7.480.493
4mk728OGenome polyprotein2.7.7.480.493
4ih71ERGenome polyprotein2.7.7.480.484
3co93MSGenome polyprotein2.7.7.480.478
4iz02BIGenome polyprotein2.7.7.480.471
3h5uH5UGenome polyprotein2.7.7.480.470
3gnwXNCGenome polyprotein2.7.7.480.467
3bsa1PDGenome polyprotein2.7.7.480.457
3h5sH5SGenome polyprotein2.7.7.480.456
3cdeN3HGenome polyprotein2.7.7.480.449
3hkwIX6Genome polyprotein2.7.7.480.449
3e51N35Genome polyprotein2.7.7.480.446
3golXNDGenome polyprotein2.7.7.480.443
1z4uPH9Polyprotein/0.442
2fvc888Polyprotein/0.440