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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3etdNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3etdNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.31.000
3etgNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.608
3eteNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.562
3mvqNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.504
4xgiNADGlutamate dehydrogenase/0.497
5ijzNAPNADP-specific glutamate dehydrogenase1.4.1.40.465
1hwzNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.446