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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3e51N35Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3e51N35Genome polyprotein2.7.7.481.000
3gynB42Genome polyprotein2.7.7.480.743
3bsa1PDGenome polyprotein2.7.7.480.731
3br9DEYGenome polyprotein2.7.7.480.706
3tyvHI3Genome polyprotein2.7.7.480.623
4ih71ERGenome polyprotein2.7.7.480.611
2gc8885Polyprotein/0.610
2fvc888Polyprotein/0.601
2giqNN2Genome polyprotein2.7.7.480.599
3u4r08FGenome polyprotein2.7.7.480.595
3h5uH5UGenome polyprotein2.7.7.480.593
4iz02BIGenome polyprotein2.7.7.480.589
3u4o08EGenome polyprotein2.7.7.480.587
3co93MSGenome polyprotein2.7.7.480.586
3cwj321Genome polyprotein2.7.7.480.579
4mka2AYGenome polyprotein2.7.7.480.579
2yoj8Y6Genome polyprotein2.7.7.480.569
3gnvXNZGenome polyprotein2.7.7.480.564
3cdeN3HGenome polyprotein2.7.7.480.561
4ih61EPGenome polyprotein2.7.7.480.560
4mk728OGenome polyprotein2.7.7.480.560
3d5m4MSGenome polyprotein2.7.7.480.559
3bsc2PDGenome polyprotein2.7.7.480.558
3golXNDGenome polyprotein2.7.7.480.558
3ska053Genome polyprotein2.7.7.480.557
3uph0C1Genome polyprotein2.7.7.480.557
3upi0C2Genome polyprotein2.7.7.480.555
1yvfPH7Polyprotein/0.550
4mk928RGenome polyprotein2.7.7.480.550
3csoXNIGenome polyprotein2.7.7.480.543
3h5sH5SGenome polyprotein2.7.7.480.540
3ske054Genome polyprotein2.7.7.480.540
1z4uPH9Polyprotein/0.535
3h2lYAKGenome polyprotein2.7.7.480.523
3cvkN34Genome polyprotein2.7.7.480.514
4mk828QGenome polyprotein2.7.7.480.513
3h98B5PGenome polyprotein2.7.7.480.507
3gnwXNCGenome polyprotein2.7.7.480.504
2qe5617Polyprotein/0.482
2gjlFMNNitronate monooxygenase1.13.12.160.448
3tjzGNPADP-ribosylation factor 1/0.446
1xe55FEPlasmepsin-23.4.23.390.440