Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.12

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.121.000
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.648
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.631
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.625
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.623
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.610
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.608
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.602
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.595
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.592
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.591
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.572
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.570
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.569
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.568
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.565
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.562
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.561
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.560
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.557
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.556
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.555
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.536
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.531
1cerNADGlyceraldehyde-3-phosphate dehydrogenase/0.528
1nq5NADGlyceraldehyde-3-phosphate dehydrogenase/0.524
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.522
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.516
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.513
2g82NADGlyceraldehyde-3-phosphate dehydrogenase/0.505
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.500
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.493
3qv1NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.484
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.463
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.461
5bsgNAPPyrroline-5-carboxylate reductase/0.456
3a4vNADNDP-sugar epimerase/0.442
4jbiNDPAlcohol dehydrogenase (Zinc)/0.442
4jjiNADAlcohol dehydrogenase class-3/0.442