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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3dhbC6LN-acyl homoserine lactonase AiiA3.1.1.81

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3dhbC6LN-acyl homoserine lactonase AiiA3.1.1.811.000
3dhcCYKN-acyl homoserine lactonase AiiA3.1.1.810.637
3q9bB3NAcetylpolyamine amidohydrolase/0.455
2v4lABJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.449
3qt62P0Mevalonate diphosphate decarboxylase/0.449
3opdHIEHeat shock protein 83/0.445
4c3f7KWTyrosine-protein kinase Lck2.7.10.20.443
2ejvNADL-threonine 3-dehydrogenase/0.442
2uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.441
2zbaZBATrichothecene 3-O-acetyltransferase/0.441
4q71FADBifunctional protein PutA/0.441
1xe65FPPlasmepsin-23.4.23.390.440
2x9dITCTetracycline repressor protein class D/0.440