1.400 Å
X-ray
2008-06-17
Name: | N-acyl homoserine lactonase AiiA |
---|---|
ID: | AHLLA_BACTK |
AC: | P0CJ63 |
Organism: | Bacillus thuringiensis subsp. kurstaki |
Reign: | Bacteria |
TaxID: | 29339 |
EC Number: | 3.1.1.81 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 15.076 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | ZN ZN |
Ligandability | Volume (Å3) |
---|---|
1.213 | 577.125 |
% Hydrophobic | % Polar |
---|---|
54.97 | 45.03 |
According to VolSite |
HET Code: | C6L |
---|---|
Formula: | C10H18NO4 |
Molecular weight: | 216.254 g/mol |
DrugBank ID: | DB07532 |
Buried Surface Area: | 63.17 % |
Polar Surface area: | 89.46 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-16.1785 | -5.97573 | 13.9116 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1 | SG | CYS- 14 | 3.8 | 0 | Hydrophobic |
C2 | CD1 | LEU- 16 | 3.51 | 0 | Hydrophobic |
C1 | CG | LEU- 16 | 3.59 | 0 | Hydrophobic |
C1 | CE2 | PHE- 107 | 4.33 | 0 | Hydrophobic |
O3 | OD1 | ASP- 108 | 2.7 | 121.02 | H-Bond (Ligand Donor) |
C9 | CB | ALA- 206 | 4.2 | 0 | Hydrophobic |
C10 | CB | PHE- 208 | 4.35 | 0 | Hydrophobic |
O2 | ZN | ZN- 251 | 2.06 | 0 | Metal Acceptor |
O1 | ZN | ZN- 252 | 2.02 | 0 | Metal Acceptor |
O4 | O | HOH- 411 | 2.68 | 133.23 | H-Bond (Protein Donor) |