sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3d2p | COA | Amino-acid acetyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3d2p | COA | Amino-acid acetyltransferase | / | 1.000 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.534 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.472 | |
| 3r95 | ACO | MccE protein | / | 0.463 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.455 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.453 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.452 | |
| 2vke | TAC | Tetracycline repressor protein class D | / | 0.449 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.449 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.447 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.447 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.441 | |
| 1s5k | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.440 | |
| 3te5 | NAI | 5'-AMP-activated protein kinase subunit gamma | / | 0.440 |