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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3cntFADPolyamine oxidase FMS1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3cntFADPolyamine oxidase FMS1/1.000
4echFADPolyamine oxidase FMS1/0.623
3cndFADPolyamine oxidase FMS1/0.601
1xpqFADPolyamine oxidase FMS1/0.584
3cn8FADPolyamine oxidase FMS1/0.570
5l3dFADLysine-specific histone demethylase 1A10.564
2iw5FADLysine-specific histone demethylase 1A10.537
4fwjFADLysine-specific histone demethylase 1B10.527
2uxxFAJLysine-specific histone demethylase 1A10.521
2yg7FADPutrescine oxidase/0.518
2babFADPutative aminooxidase/0.512
3zdnFADMonoamine oxidase N1.4.3.40.503
4i58FADCyclohexylamine Oxidase/0.500
3rhaFDAPutrescine oxidase/0.496
3kpfFADPolyamine oxidase1.5.3.140.495
1f8rFADL-amino-acid oxidase1.4.3.20.485
4guuFA9Lysine-specific histone demethylase 1B10.485
3k7tFAD6-hydroxy-L-nicotine oxidase/0.482
1h81FADPolyamine oxidase1.5.3.140.479
2bacFADPutative aminooxidase/0.476
3qj4FADRenalase/0.476
2b9xFADPutative aminooxidase/0.474
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.467
1tdnFADL-amino-acid oxidase1.4.3.20.466
2ba9FADPutative aminooxidase/0.465
3kkjFADRenalase/0.462
1tdkFADL-amino-acid oxidase1.4.3.20.457
3ad9FADSubunit beta of sarcosine oxidase/0.456
2jb1FADL-amino acid oxidase/0.454
3kveFADL-amino-acid oxidase/0.454
2b9yFADPutative aminooxidase/0.453
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.453
1tdoFADL-amino-acid oxidase1.4.3.20.450
2yr4FADPhenylalanine 2-monooxygenase precursor1.13.12.90.449
3bi2FADPolyamine oxidase FMS1/0.449
1mxtFAECholesterol oxidase1.1.3.60.448
1d4cFADFumarate reductase flavoprotein subunit1.3.5.40.446
2jb2FADL-amino acid oxidase/0.444
4gdpFADPolyamine oxidase FMS1/0.443
1d4dFADFumarate reductase flavoprotein subunit1.3.5.40.442
1n4uFAECholesterol oxidase1.1.3.60.442
2igoFADPyranose 2-oxidase/0.442
1qo8FADFumarate reductase flavoprotein subunit/0.441
3vqrFADPutative oxidoreductase/0.441