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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3c1mANPProbable aspartokinase2.7.2.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3c1mANPProbable aspartokinase2.7.2.41.000
4bibIEOMitogen-activated protein kinase kinase kinase 52.7.11.250.458
2ycrHCWSerine/threonine-protein kinase Chk22.7.11.10.457
3dj4UD1Bifunctional protein GlmU/0.453
1u3dFADCryptochrome-1/0.451
2vv9IM9Cyclin-dependent kinase 22.7.11.220.449
3ea0ATPATPase, ParA family/0.449
1rfvADPPyridoxal kinase2.7.1.350.448
3bu5ATPInsulin receptor2.7.10.10.448
1u3cFADCryptochrome-1/0.446
1uu9BI33-phosphoinositide-dependent protein kinase 12.7.11.10.446
2pe24643-phosphoinositide-dependent protein kinase 12.7.11.10.446
2phkATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform2.7.11.190.446
1zarADPRIO-type serine/threonine-protein kinase Rio22.7.11.10.445
2vwqNAPGlucose 1-dehydrogenase/0.444
4egbNADdTDP-glucose 4,6-dehydratase/0.444
2exlGDMEndoplasmin/0.443
3sjhLARActin, alpha skeletal muscle/0.443
5av2KMPDeath-associated protein kinase 12.7.11.10.443
3uzp0CKCasein kinase I isoform delta2.7.11.10.442
1h5rTHMGlucose-1-phosphate thymidylyltransferase 1/0.441
2v2qNVG4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.440
4a9uA9USerine/threonine-protein kinase Chk22.7.11.10.440
4djhJDCKappa-type opioid receptor/0.440