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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3bi5FADPolyamine oxidase FMS1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3bi5FADPolyamine oxidase FMS1/1.000
3bi2FADPolyamine oxidase FMS1/0.613
4gdpFADPolyamine oxidase FMS1/0.608
3cndFADPolyamine oxidase FMS1/0.594
3cn8FADPolyamine oxidase FMS1/0.584
4echFADPolyamine oxidase FMS1/0.578
1xpqFADPolyamine oxidase FMS1/0.575
1rsgFADPolyamine oxidase FMS1/0.566
2hkoFADLysine-specific histone demethylase 1A10.565
3cntFADPolyamine oxidase FMS1/0.548
2dw4FADLysine-specific histone demethylase 1A10.547
2uxxFAJLysine-specific histone demethylase 1A10.541
4xbfFADLysine-specific histone demethylase 1A10.541
4fwjFADLysine-specific histone demethylase 1B10.528
2iw5FADLysine-specific histone demethylase 1A10.519
5l3dFADLysine-specific histone demethylase 1A10.516
1z6lFADPolyamine oxidase FMS1/0.515
4gutFADLysine-specific histone demethylase 1B10.512
4fweFADLysine-specific histone demethylase 1B10.500
4guuFA9Lysine-specific histone demethylase 1B10.479
2yg4FADPutrescine oxidase/0.473
2yg5FADPutrescine oxidase/0.472
1h83FADPolyamine oxidase1.5.3.140.466
2yg3FADPutrescine oxidase/0.454
3k7tFAD6-hydroxy-L-nicotine oxidase/0.452
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.448
3rhaFDAPutrescine oxidase/0.447
3we0FADLysine 2-monooxygenase/0.445
2vvlFADMonoamine oxidase N1.4.3.40.444
3zdnFADMonoamine oxidase N1.4.3.40.444
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.440