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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2yg4FADPutrescine oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2yg4FADPutrescine oxidase/1.000
2yg5FADPutrescine oxidase/0.570
2yg7FADPutrescine oxidase/0.562
3rhaFDAPutrescine oxidase/0.546
2vvlFADMonoamine oxidase N1.4.3.40.544
3cn8FADPolyamine oxidase FMS1/0.530
3k7tFAD6-hydroxy-L-nicotine oxidase/0.517
3zdnFADMonoamine oxidase N1.4.3.40.517
2iw5FADLysine-specific histone demethylase 1A10.514
3cndFADPolyamine oxidase FMS1/0.513
5l3dFADLysine-specific histone demethylase 1A10.513
4echFADPolyamine oxidase FMS1/0.511
3k7mFAD6-hydroxy-L-nicotine oxidase/0.509
3bi2FADPolyamine oxidase FMS1/0.506
2yg3FADPutrescine oxidase/0.505
1xpqFADPolyamine oxidase FMS1/0.500
4fwjFADLysine-specific histone demethylase 1B10.492
4i58FADCyclohexylamine Oxidase/0.492
3kpfFADPolyamine oxidase1.5.3.140.490
2uxxFAJLysine-specific histone demethylase 1A10.485
4gdpFADPolyamine oxidase FMS1/0.476
3cntFADPolyamine oxidase FMS1/0.467
2dw4FADLysine-specific histone demethylase 1A10.452
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.452
2hkoFADLysine-specific histone demethylase 1A10.447
2bacFADPutative aminooxidase/0.446
3kveFADL-amino-acid oxidase/0.445
1f8sFADL-amino-acid oxidase1.4.3.20.440
2babFADPutative aminooxidase/0.440