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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2xanANPInositol-pentakisphosphate 2-kinase2.7.1.158

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2xanANPInositol-pentakisphosphate 2-kinase2.7.1.1581.000
4axfANPInositol-pentakisphosphate 2-kinase2.7.1.1580.635
4aqkADPInositol-pentakisphosphate 2-kinase2.7.1.1580.584
4lv7ADPInositol-pentakisphosphate 2-kinase2.7.1.1580.578
4axdANPInositol-pentakisphosphate 2-kinase2.7.1.1580.572
4bl1ANPMaternal embryonic leucine zipper kinase2.7.11.10.498
4zolACPTubulin tyrosine ligase/0.488
3nieANPMitogen-activated protein kinase/0.487
5av3KMPDeath-associated protein kinase 12.7.11.10.487
2f7e2EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.480
1mruAGSSerine/threonine-protein kinase PknB2.7.11.10.470
5av2KMPDeath-associated protein kinase 12.7.11.10.469
4bfmANPMaternal embryonic leucine zipper kinase2.7.11.10.467
4mq12C3Dual specificity tyrosine-phosphorylation-regulated kinase 1A2.7.12.10.464
4ekl0RFRAC-alpha serine/threonine-protein kinase2.7.11.10.462
2uzuL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.461
2uzwSS4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.461
4fv6E57Mitogen-activated protein kinase 12.7.11.240.458
3oroAGSSerine/threonine protein kinase/0.456
1jklANPDeath-associated protein kinase 12.7.11.10.455
2ojf4PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.454
3kvxFMYMitogen-activated protein kinase 102.7.11.240.454
2oh02PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.453
3ncz3NCRho-associated protein kinase 12.7.11.10.453
3dfcANPDeath-associated protein kinase 12.7.11.10.452
3igoANPCalmodulin-domain protein kinase 1, putative/0.450
4gb90WRPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.450
1zp9ATPRIO-type serine/threonine-protein kinase Rio12.7.11.10.448
2gu8796cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.447
4j95ACPFibroblast growth factor receptor 2/0.447
3lpbNVBTyrosine-protein kinase JAK2/0.446
3kkvB99cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.445
5e8ySTUTGF-beta receptor type-22.7.11.300.445
3qcx3Q23-phosphoinositide-dependent protein kinase 12.7.11.10.444
4nifANPMitogen-activated protein kinase 12.7.11.240.444
1ydrIQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.443
4ct2ATP3-phosphoinositide-dependent protein kinase 12.7.11.10.443
2jdsL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.442
2uzvSS5cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.442
3qcy3Q33-phosphoinositide-dependent protein kinase 12.7.11.10.442
4h3qANPMitogen-activated protein kinase 12.7.11.240.442
4iwo1H4Serine/threonine-protein kinase TBK12.7.11.10.442
2vo3M04cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.441
2xrwANPMitogen-activated protein kinase 82.7.11.240.441
4fg9ATPCalcium/calmodulin-dependent protein kinase type 12.7.11.170.441
1tqpATPRIO-type serine/threonine-protein kinase Rio22.7.11.10.440
4s34ANPMitogen-activated protein kinase 12.7.11.240.440