Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2wonZZEGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2wonZZEGag-Pol polyprotein2.7.7.491.000
3c6uM22Gag-Pol polyprotein2.7.7.490.689
4h4o506Gag-Pol polyprotein2.7.7.490.652
3c6tM14Gag-Pol polyprotein2.7.7.490.640
4rw6494Gag-Pol polyprotein2.7.7.490.638
3t1a5MAGag-Pol polyprotein2.7.7.490.622
3dyaPZLGag-Pol polyprotein2.7.7.490.617
4h4m494Gag-Pol polyprotein2.7.7.490.612
3lalKRVGag-Pol polyprotein2.7.7.490.608
4rw4494Gag-Pol polyprotein2.7.7.490.608
3drrR8EGag-Pol polyprotein2.7.7.490.607
3dokGWJPol protein/0.596
4mfb29TGag-Pol polyprotein2.7.7.490.590
3drpR8EGag-Pol polyprotein2.7.7.490.589
3lakKR1Gag-Pol polyprotein2.7.7.490.577
2jleI15Reverse transcriptase/RNaseH/0.569
2b5j3ACGag-Pol polyprotein2.7.7.490.568
2be2R22Gag-Pol polyprotein2.7.7.490.564
3dmjGWEPol protein/0.562
4lsl1YQGag-Pol polyprotein2.7.7.490.562
3t195MAGag-Pol polyprotein2.7.7.490.555
2ynhEURGag-Pol polyprotein2.7.7.490.551
3dlgGWEGag-Pol polyprotein2.7.7.490.550
3is9AC7Gag-Pol polyprotein2.7.7.490.547
2ynfWHUGag-Pol polyprotein2.7.7.490.514
3tamM06Gag-Pol polyprotein2.7.7.490.510
4ifvT27Gag-Pol polyprotein2.7.7.490.506
3qlhT27Gag-Pol polyprotein2.7.7.490.497
4i2pG73Gag-Pol polyprotein2.7.7.490.490
1c1bGCAGag-Pol polyprotein2.7.7.490.484
1c1c612Gag-Pol polyprotein2.7.7.490.484
3dolGWIPol protein/0.480
1rtiHEFGag-Pol polyprotein2.7.7.490.477
4g1qT27Gag-Pol polyprotein2.7.7.490.477
1jlcFTCGag-Pol polyprotein2.7.7.490.473
3bgrT27Gag-Pol polyprotein2.7.7.490.473
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.472
3irxUDRGag-Pol polyprotein2.7.7.490.471
4kfbT27Gag-Pol polyprotein2.7.7.490.470
1rt1MKCGag-Pol polyprotein2.7.7.490.468
2zd1T27Gag-Pol polyprotein2.7.7.490.468
2z3uCRRCytochrome P450/0.466
2braFAD[F-actin]-methionine sulfoxide oxidase MICAL11.14.130.460
4id5T27Gag-Pol polyprotein2.7.7.490.460
1tl3H20Gag-Pol polyprotein2.7.7.490.458
1rt7UC4Gag-Pol polyprotein2.7.7.490.457
3med65BGag-Pol polyprotein2.7.7.490.456
3rak03ZCyclin-dependent kinase 22.7.11.220.456
1fkoEFZGag-Pol polyprotein2.7.7.490.454
3mec65BGag-Pol polyprotein2.7.7.490.451
3h1jSMACytochrome b/0.450
3s1h56ZCyclin-dependent kinase 22.7.11.220.449
4em9TCEPeroxisome proliferator-activated receptor gamma/0.448
3ral04ZCyclin-dependent kinase 22.7.11.220.444
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.442
3rmf20ZCyclin-dependent kinase 22.7.11.220.441
4at3LTIBDNF/NT-3 growth factors receptor2.7.10.10.441
1di8DTQCyclin-dependent kinase 22.7.11.220.440