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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2vwqNAPGlucose 1-dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2vwqNAPGlucose 1-dehydrogenase/1.000
2vwpNDPGlucose 1-dehydrogenase/0.562
2vwhNAPGlucose 1-dehydrogenase/0.521
4gl4NAIAlcohol dehydrogenase class-3/0.516
4ejmNAPPutative zinc-binding dehydrogenase/0.501
3m6iNADL-arabinitol 4-dehydrogenase1.1.1.120.479
1f8fNADBenzyl alcohol dehydrogenase/0.476
1mp0NADAlcohol dehydrogenase class-31.1.1.10.470
2ejvNADL-threonine 3-dehydrogenase/0.469
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.468
1tehNADAlcohol dehydrogenase class-31.1.1.10.456
3gfbNADL-threonine 3-dehydrogenase/0.452
1qlhNADAlcohol dehydrogenase E chain1.1.1.10.451
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.443
1fm4DXCMajor pollen allergen Bet v 1-L/0.442