scPDB - Distribution of Binding site Similarity values of 2vi5 entry / Site 4

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2vi5	Y19	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2vi5	Y19	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	1.000
1w29	TS0	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.575
1w19	T4P	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.573
1w19	T5P	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.540
1w19	T1P	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.536
2c9d	PHR	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.536
2c94	TSF	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.529
1kyx	CRM	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.525
1w29	TS1	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.521
1ejb	INJ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.515
2a57	CRM	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.511
2o6h	INI	6,7-dimethyl-8-ribityllumazine synthase 1	2.5.1.78	0.508
1nqv	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.494
1nqu	RDL	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.489
4kq6	DLZ	6,7-dimethyl-8-ribityllumazine synthase	/	0.486
1kyy	INI	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.479
2c92	TP6	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.464
1nqx	RLP	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.462
2a59	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.462
2c97	JCL	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.459
1rvv	INI	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.451
1nqw	5YL	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.444
2a58	RBF	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.444