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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2r6hFADNa(+)-translocating NADH-quinone reductase subunit F

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2r6hFADNa(+)-translocating NADH-quinone reductase subunit F/1.000
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.646
3ojxFADNADPH--cytochrome P450 reductase/0.566
3fpkFADFerredoxin-NADP reductase/0.550
1f20FADNitric oxide synthase, brain1.14.13.390.508
1gvhFADFlavohemoprotein/0.502
1tllFADNitric oxide synthase, brain1.14.13.390.500
2piaFMNPhthalate dioxygenase reductase/0.485
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.481
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.475
1gawFADFerredoxin/0.471
1amoFADNADPH--cytochrome P450 reductase/0.470
3w5uFADFerredoxin/0.464
1j9zFADNADPH--cytochrome P450 reductase/0.457
3vo2FADFerredoxin--NADP reductase/0.456
3zc3FADFerredoxin--NADP reductase1.18.1.20.454
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.453
1fdrFADFerredoxin--NADP reductase1.18.1.20.450
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.450
1ja0FADNADPH--cytochrome P450 reductase/0.444
3qfcFADNADPH--cytochrome P450 reductase/0.442