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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2olcADPMethylthioribose kinase2.7.1.100

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2olcADPMethylthioribose kinase2.7.1.1001.000
2pulACPMethylthioribose kinase2.7.1.1000.591
2punACPMethylthioribose kinase2.7.1.1000.498
2pupADPMethylthioribose kinase2.7.1.1000.489
3igoANPCalmodulin-domain protein kinase 1, putative/0.460
2puiADPMethylthioribose kinase2.7.1.1000.451
4a4o664Serine/threonine-protein kinase PLK12.7.11.210.449
2r7b2533-phosphoinositide-dependent protein kinase 12.7.11.10.448
4f1mACPProbable serine/threonine-protein kinase roco42.7.11.10.447
4ug91EWNitric oxide synthase oxygenase1.14.13.1650.447
2in6839Wee1-like protein kinase2.7.10.20.446
5av2KMPDeath-associated protein kinase 12.7.11.10.445
4k1b1OCSerine/threonine-protein kinase pim-12.7.11.10.444
1q3wATUGlycogen synthase kinase-3 beta2.7.11.260.443
3eah327Nitric oxide synthase, endothelial1.14.13.390.443
3w1wCHDFerrochelatase, mitochondrial4.99.1.10.441
2uw0GVKcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.440