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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2jh0701Prothrombin3.4.21.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2jh0701Prothrombin3.4.21.51.000
2uuk897Prothrombin3.4.21.50.684
2jh5895Prothrombin3.4.21.50.649
2jh6894Prothrombin3.4.21.50.645
1ypeUIPProthrombin3.4.21.50.616
1mu6CDAProthrombin3.4.21.50.611
2v3oI26Prothrombin3.4.21.50.611
1d6w00RProthrombin3.4.21.50.609
1ypmRA4Prothrombin3.4.21.50.609
3c1kT15Prothrombin3.4.21.50.607
4ayy9MXProthrombin3.4.21.50.607
1sb1165Prothrombin3.4.21.50.601
1d3dBZTProthrombin3.4.21.50.600
1zgi382Prothrombin3.4.21.50.598
4ax9N5NProthrombin3.4.21.50.598
2anmCDOProthrombin3.4.21.50.594
1t4v14AProthrombin3.4.21.50.593
2cf8ESHProthrombin3.4.21.50.593
2cn0F25Prothrombin3.4.21.50.592
2r2mI50Prothrombin3.4.21.50.592
1mueCDDProthrombin3.4.21.50.591
1ta6177Prothrombin3.4.21.50.591
2zc922UProthrombin3.4.21.50.589
1d3pBT3Prothrombin3.4.21.50.586
2zi224UProthrombin3.4.21.50.584
1nzq162Prothrombin3.4.21.50.583
1d4pBPPProthrombin3.4.21.50.581
1zgv501Prothrombin3.4.21.50.580
2zhq27UProthrombin3.4.21.50.580
1z71L17Prothrombin3.4.21.50.579
1xm1GAHProthrombin3.4.21.50.577
2zda32UProthrombin3.4.21.50.577
2zfq45UProthrombin3.4.21.50.577
4n3l2FNProthrombin3.4.21.50.575
2bvs2CEProthrombin3.4.21.50.574
2cf9348Prothrombin3.4.21.50.574
3qwc98PProthrombin3.4.21.50.573
1c4yIH3Prothrombin3.4.21.50.571
1jwtBLIProthrombin3.4.21.50.570
1ypgUIRProthrombin3.4.21.50.570
1nm6L86Prothrombin3.4.21.50.568
1yplRA8Prothrombin3.4.21.50.565
1d9i00PProthrombin3.4.21.50.564
1oytFSNProthrombin3.4.21.50.564
2zfr46UProthrombin3.4.21.50.562
2zhe13UProthrombin3.4.21.50.561
1c4uIH1Prothrombin3.4.21.50.557
2zgx29UProthrombin3.4.21.50.557
1t4u81AProthrombin3.4.21.50.556
3biu10UProthrombin3.4.21.50.555
2znk31UProthrombin3.4.21.50.554
3hatGLY_VAL_ARG_RNGProthrombin3.4.21.50.554
4az29MUProthrombin3.4.21.50.552
1a4wQWEProthrombin3.4.21.50.551
1ypkCCRProthrombin3.4.21.50.550
2zhf49UProthrombin3.4.21.50.550
2pksG44Prothrombin3.4.21.50.547
3eq02TSProthrombin3.4.21.50.543
1ypjUIBProthrombin3.4.21.50.541
4ayv9MQProthrombin3.4.21.50.540
2bdyUNBProthrombin3.4.21.50.538
2gdeSN3Prothrombin3.4.21.50.537
2zdv37UProthrombin3.4.21.50.530
1k21IGNProthrombin3.4.21.50.529
4e7r0NWProthrombin3.4.21.50.529
2zhw12UProthrombin3.4.21.50.526
4rn615UProthrombin3.4.21.50.525
1mu8CDBProthrombin3.4.21.50.524
4lxb7R9Prothrombin3.4.21.50.523
3qdzPRO_ALA_PRO_ARGProthrombin3.4.21.50.521
2v3hI25Prothrombin3.4.21.50.520
2zgb21UProthrombin3.4.21.50.516
7kmeACE_0BN_CHG_PRRProthrombin3.4.21.50.514
1ae8AZLProthrombin3.4.21.50.512
1afeALZProthrombin3.4.21.50.512
2zfp19UProthrombin3.4.21.50.511
1k22MELProthrombin3.4.21.50.508
2zf051UProthrombin3.4.21.50.507
2zg050UProthrombin3.4.21.50.507
2uuj896Prothrombin3.4.21.50.505
3dhk23UProthrombin3.4.21.50.504
1zrb062Prothrombin3.4.21.50.502
1vzqSHYProthrombin3.4.21.50.498
3p1799PProthrombin3.4.21.50.495
4bamMM9Prothrombin3.4.21.50.495
2ziq26UProthrombin3.4.21.50.493
4hfp15UProthrombin3.4.21.50.493
3dux64UProthrombin3.4.21.50.492
5cmx0G6Prothrombin3.4.21.50.490
2bxtC2DProthrombin3.4.21.50.489
2zff53UProthrombin3.4.21.50.484
4bakM67Prothrombin3.4.21.50.483
4baoMVFProthrombin3.4.21.50.482
1riwOSCProthrombin3.4.21.50.478
4bahMELProthrombin3.4.21.50.477
3qto10PProthrombin3.4.21.50.470
1c4vIH2Prothrombin3.4.21.50.468
3egkM18Prothrombin3.4.21.50.466
1gj5130Prothrombin3.4.21.50.463
3c27DKKProthrombin3.4.21.50.462
1ktsC24Prothrombin3.4.21.50.458
1bcuPRLProthrombin3.4.21.50.457
1umaIN2Prothrombin3.4.21.50.456
4baqM4ZProthrombin3.4.21.50.456
5dp2NAPCurF/0.456
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.455
3utu1TSProthrombin3.4.21.50.453
1o0d163Prothrombin3.4.21.50.452
3qtv06PProthrombin3.4.21.50.452
2a2xNA9Prothrombin3.4.21.50.450
4banM6SProthrombin3.4.21.50.450
4gxs0YSGlutamate receptor 2/0.448
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
3adaNADSubunit alpha of sarocosine oxidase/0.444
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.444
1w7gMIUProthrombin3.4.21.50.443
3biv11UProthrombin3.4.21.50.441