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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2jb1FADL-amino acid oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2jb1FADL-amino acid oxidase/1.000
2jb2FADL-amino acid oxidase/0.637
1f8rFADL-amino-acid oxidase1.4.3.20.536
5l3dFADLysine-specific histone demethylase 1A10.507
1tdnFADL-amino-acid oxidase1.4.3.20.505
1tdkFADL-amino-acid oxidase1.4.3.20.499
1tdoFADL-amino-acid oxidase1.4.3.20.497
4fwjFADLysine-specific histone demethylase 1B10.494
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.490
2uxxFAJLysine-specific histone demethylase 1A10.487
2iw5FADLysine-specific histone demethylase 1A10.486
4i58FADCyclohexylamine Oxidase/0.485
4echFADPolyamine oxidase FMS1/0.479
3cn8FADPolyamine oxidase FMS1/0.477
3rhaFDAPutrescine oxidase/0.477
3zdnFADMonoamine oxidase N1.4.3.40.471
3k7tFAD6-hydroxy-L-nicotine oxidase/0.470
2yg7FADPutrescine oxidase/0.468
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.460
2ba9FADPutative aminooxidase/0.457
3qj4FADRenalase/0.456
3kkjFADRenalase/0.455
3kpfFADPolyamine oxidase1.5.3.140.452
3cndFADPolyamine oxidase FMS1/0.451
3cntFADPolyamine oxidase FMS1/0.450
4gcmFADThioredoxin reductase1.8.1.90.449
1wamFADUDP-galactopyranose mutase5.4.99.90.448
3intFDAUDP-galactopyranose mutase5.4.99.90.448
3vqrFADPutative oxidoreductase/0.448
1e1lFADNADPH:adrenodoxin oxidoreductase, mitochondrial1.18.1.60.446
1xpqFADPolyamine oxidase FMS1/0.446
3kveFADL-amino-acid oxidase/0.444
4ccrFADThioredoxin reductase/0.444
4guuFA9Lysine-specific histone demethylase 1B10.444
2yr4FADPhenylalanine 2-monooxygenase precursor1.13.12.90.441
2babFADPutative aminooxidase/0.440