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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2ibuCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2ibuCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.91.000
2ibwCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.90.730
2ibyCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.90.612
1wl4COAAcetyl-CoA acetyltransferase, cytosolic2.3.1.90.506
3vt9YI4Vitamin D3 receptor/0.453
1h2bNAJNAD-dependent alcohol dehydrogenase/0.451
3a783EVVitamin D3 receptor/0.451
1d3dBZTProthrombin3.4.21.50.449
1oj4CDM4-diphosphocytidyl-2-C-methyl-D-erythritol kinase2.7.1.1480.448
3lkhLT6Genome polyprotein2.7.7.480.448
2hcdBIVVitamin D3 receptor A/0.445
4c2jCOA3-ketoacyl-CoA thiolase, mitochondrial2.3.1.160.445
2vkeTACTetracycline repressor protein class D/0.443
4ead0NPThymidine phosphorylase2.4.2.40.443
3pqbVGPPutative oxidoreductase/0.442
3vt7VDXVitamin D3 receptor/0.441
4ia3BIVVitamin D3 receptor A/0.441
4b3aTACTetracycline repressor protein class D/0.440