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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2gmvPEPPhosphoenolpyruvate carboxykinase, cytosolic [GTP]4.1.1.32

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2gmvPEPPhosphoenolpyruvate carboxykinase, cytosolic [GTP]4.1.1.321.000
3v4tUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.471
3sptUD1Bifunctional protein GlmU/0.467
5eomCTPPutative nucleotidyltransferase MAB21L1/0.467
3swqEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.459
2rl1UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.458
4to5TTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.456
2r7pANPNon-structural protein 23.6.40.455
4c77N01Phenylacetone monooxygenase1.14.13.920.455
3lgxATPD-alanine--poly(phosphoribitol) ligase subunit 1/0.454
4d04NAPPhenylacetone monooxygenase1.14.13.920.454
5fkoTDCTetracycline repressor protein class D/0.453
1n7hGDPGDP-mannose 4,6 dehydratase 24.2.1.470.449
2vaxCSCAcetyl-CoA--deacetylcephalosporin C acetyltransferase2.3.1.1750.449
4u0oMTALipoyl synthase 2/0.449
5fklTDCTetracycline repressor protein class D/0.449
3kjiADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC/0.448
3hf3FMNChromate reductase/0.447
3vcyUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.447
1rywEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.446
2hq9FADMll6688 protein/0.446
3cisATPUniversal stress protein Rv2623/0.446
4b3aTACTetracycline repressor protein class D/0.446
4r1lADPPhenylacetate-coenzyme A ligase/0.446
2ggqTTPDual sugar-1-phosphate nucleotidylyltransferase/0.444
4loh1SYStimulator of interferon genes protein/0.444
1lrkUD1UDP-glucose 4-epimerase5.1.3.20.443
2cmkCDPCytidylate kinase2.7.4.250.442
2onpNADAldehyde dehydrogenase, mitochondrial1.2.1.30.442
2ydfIO3Serum albumin/0.442
3t3fN5PDNA polymerase I, thermostable2.7.7.70.442
1ek6UPGUDP-glucose 4-epimerase/0.441
4hmvWUBPhenazine biosynthesis protein PhzG1.40.441
4oviN01Phenylacetone monooxygenase1.14.13.920.441
1xg5NAPDehydrogenase/reductase SDR family member 11/0.440
2ylwNAPPhenylacetone monooxygenase1.14.13.920.440
3av7KYNUncharacterized protein/0.440