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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2f94BFQFarnesyl pyrophosphate synthase2.5.1.10

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2f94BFQFarnesyl pyrophosphate synthase2.5.1.101.000
3rbmB73Farnesyl pyrophosphate synthase, putative/0.588
4q23RISFarnesyl pyrophosphate synthase2.5.1.100.588
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.587
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.574
2opmNI9Farnesyl pyrophosphate synthase2.5.1.100.540
3dyh721Farnesyl pyrophosphate synthase/0.539
2i191BYFarnesyl pyrophosphate synthase/0.533
3egt722Farnesyl pyrophosphate synthase/0.533
1yv5RISFarnesyl pyrophosphate synthase2.5.1.100.531
1yq7RISFarnesyl pyrophosphate synthase2.5.1.100.522
3oabDSTGeranyl diphosphate synthase large subunit/0.513
4nkeRISFarnesyl pyrophosphate synthase2.5.1.100.502
1zw5ZOLFarnesyl pyrophosphate synthase2.5.1.100.491
3ldwIPEFarnesyl pyrophosphate synthase, putative/0.488
3ryeUNRFarnesyl pyrophosphate synthase2.5.1.100.487
3ez3ZOLFarnesyl pyrophosphate synthase, putative/0.484
4kqsRISFarnesyl pyrophosphate synthase2.5.1.100.483
4dwb0M7Farnesyl pyrophosphate synthase/0.478
5ero210Fusicoccadiene synthase2.5.1.290.477
4lfgIPEPutative geranyltranstransferase/0.474
4kqsIPEFarnesyl pyrophosphate synthase2.5.1.100.472
2opnSUFFarnesyl pyrophosphate synthase2.5.1.100.468
4nkeIPEFarnesyl pyrophosphate synthase2.5.1.100.464
3ez3IPEFarnesyl pyrophosphate synthase, putative/0.461
3krfIPEGeranyl diphosphate synthase large subunit/0.459
4h5eYS4Farnesyl pyrophosphate synthase2.5.1.100.442
3krfDSTGeranyl diphosphate synthase large subunit/0.440