sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2e8t | IPE | Geranylgeranyl pyrophosphate synthase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 2e8t | IPE | Geranylgeranyl pyrophosphate synthase | / | 1.000 | |
| 2zev | IPE | Geranylgeranyl pyrophosphate synthase | / | 0.623 | |
| 2e94 | 364 | Geranylgeranyl pyrophosphate synthase | / | 0.580 | |
| 2e8u | IPE | Geranylgeranyl pyrophosphate synthase | / | 0.577 | |
| 1rqj | RIS | Farnesyl diphosphate synthase | 2.5.1.10 | 0.553 | |
| 1rqj | IPE | Farnesyl diphosphate synthase | 2.5.1.10 | 0.542 | |
| 5ero | 210 | Fusicoccadiene synthase | 2.5.1.29 | 0.539 | |
| 4lfg | IPE | Putative geranyltranstransferase | / | 0.536 | |
| 2z7h | GG3 | Geranylgeranyl pyrophosphate synthase | / | 0.519 | |
| 3krf | IPE | Geranyl diphosphate synthase large subunit | / | 0.517 | |
| 2z52 | H23 | Geranylgeranyl pyrophosphate synthase | / | 0.497 | |
| 3oab | DST | Geranyl diphosphate synthase large subunit | / | 0.495 | |
| 2z78 | H86 | Geranylgeranyl pyrophosphate synthase | / | 0.492 | |
| 2z4y | 252 | Geranylgeranyl pyrophosphate synthase | / | 0.489 | |
| 3rbm | B73 | Farnesyl pyrophosphate synthase, putative | / | 0.487 | |
| 3krf | DST | Geranyl diphosphate synthase large subunit | / | 0.480 | |
| 2f94 | BFQ | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.478 | |
| 2e8w | IPE | Geranylgeranyl pyrophosphate synthase | / | 0.477 | |
| 4q23 | RIS | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.477 | |
| 2i19 | 1BY | Farnesyl pyrophosphate synthase | / | 0.470 | |
| 2z50 | 028 | Geranylgeranyl pyrophosphate synthase | / | 0.465 | |
| 4dwb | 0M7 | Farnesyl pyrophosphate synthase | / | 0.460 | |
| 3ryw | K9H | Farnesyl pyrophosphate synthase, putative | / | 0.457 | |
| 2z4z | SC0 | Geranylgeranyl pyrophosphate synthase | / | 0.446 | |
| 4e90 | 7RG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.445 | |
| 4lfv | YS4 | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.444 | |
| 4dxj | 0M9 | Farnesyl pyrophosphate synthase | / | 0.442 | |
| 3dyh | 721 | Farnesyl pyrophosphate synthase | / | 0.441 | |
| 3ez3 | ZOL | Farnesyl pyrophosphate synthase, putative | / | 0.440 |