sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2e1m | FAD | L-glutamate oxidase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 2e1m | FAD | L-glutamate oxidase | / | 1.000 | |
| 1f8s | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.520 | |
| 5l3d | FAD | Lysine-specific histone demethylase 1A | 1 | 0.479 | |
| 3we0 | FAD | Lysine 2-monooxygenase | / | 0.469 | |
| 2yg4 | FAD | Putrescine oxidase | / | 0.456 | |
| 2dw4 | FAD | Lysine-specific histone demethylase 1A | 1 | 0.451 | |
| 3cnd | FAD | Polyamine oxidase FMS1 | / | 0.451 | |
| 1tdn | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.448 | |
| 3zdn | FAD | Monoamine oxidase N | 1.4.3.4 | 0.446 | |
| 2vvl | FAD | Monoamine oxidase N | 1.4.3.4 | 0.443 | |
| 2yg5 | FAD | Putrescine oxidase | / | 0.442 | |
| 2qs3 | UBE | Glutamate receptor ionotropic, kainate 1 | / | 0.441 | |
| 3bi2 | FAD | Polyamine oxidase FMS1 | / | 0.441 | |
| 4xbf | FAD | Lysine-specific histone demethylase 1A | 1 | 0.441 |